Geodermatophilus poikilotrophi sp. nov.: A Multitolerant Actinomycete Isolated from Dolomitic Marble
Identifieur interne : 000180 ( Main/Exploration ); précédent : 000179; suivant : 000181Geodermatophilus poikilotrophi sp. nov.: A Multitolerant Actinomycete Isolated from Dolomitic Marble
Auteurs : Maria Del Carmen Montero-Calasanz [Allemagne, Espagne] ; Benjamin Hofner [Allemagne] ; Markus Göker [Allemagne] ; Manfred Rohde [Allemagne] ; Cathrin Spröer [Allemagne] ; Karima Hezbri [Tunisie] ; Maher Gtari [Tunisie] ; Peter Schumann [Allemagne] ; Hans-Peter Klenk [Allemagne]Source :
- BioMed Research International [ 2314-6133 ] ; 2014.
Abstract
A novel Gram-reaction-positive, aerobic actinobacterium, tolerant to mitomycin C, heavy metals, metalloids, hydrogen peroxide, desiccation, and ionizing- and UV-radiation, designated G18T, was isolated from dolomitic marble collected from outcrops in Samara (Namibia). The growth range was 15–35°C, at pH 5.5–9.5 and in presence of 1% NaCl, forming greenish-black coloured colonies on GYM
Url:
DOI: 10.1155/2014/914767
PubMed: 25114928
PubMed Central: 4119925
Affiliations:
- Allemagne, Espagne, Tunisie
- Bavière, District de Moyenne-Franconie, Gouvernorat de Tunis
- Erlangen, Tunis
Links toward previous steps (curation, corpus...)
- to stream Pmc, to step Corpus: 000403
- to stream Pmc, to step Curation: 000402
- to stream Pmc, to step Checkpoint: 000168
- to stream Ncbi, to step Merge: 000336
- to stream Ncbi, to step Curation: 000336
- to stream Ncbi, to step Checkpoint: 000336
- to stream Main, to step Merge: 000180
- to stream Main, to step Curation: 000180
Le document en format XML
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Braunschweig</wicri:noRegion><wicri:noRegion>38124 Braunschweig</wicri:noRegion><wicri:noRegion>38124 Braunschweig</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:aff id="I2">Instituto de Investigacióon y Formacióon Agraria y Pesquera (IFAPA), Centro Las Torres-Tomejil, Carretera Sevilla-Cazalla de la Sierra, Km 12.2, 41200 Alcalá del Río, Sevilla, Spain</nlm:aff><country xml:lang="fr">Espagne</country><wicri:regionArea>Instituto de Investigacióon y Formacióon Agraria y Pesquera (IFAPA), Centro Las Torres-Tomejil, Carretera Sevilla-Cazalla de la Sierra, Km 12.2, 41200 Alcalá del Río, Sevilla</wicri:regionArea><wicri:noRegion>Sevilla</wicri:noRegion></affiliation></author><author><name sortKey="Hofner, Benjamin" sort="Hofner, Benjamin" uniqKey="Hofner B" first="Benjamin" last="Hofner">Benjamin Hofner</name><affiliation wicri:level="1"><nlm:aff id="I3">Institut für Medizininformatik, Biometrie und Epidemiologie, Friedrich-Alexander-Universität Erlangen-Nürnberg, Waldstraße 6, 91054 Erlangen, Germany</nlm:aff><country xml:lang="fr">Allemagne</country><wicri:regionArea>Institut für Medizininformatik, Biometrie und Epidemiologie, Friedrich-Alexander-Universität Erlangen-Nürnberg, Waldstraße 6, 91054 Erlangen</wicri:regionArea><wicri:noRegion>91054 Erlangen</wicri:noRegion><placeName><settlement type="city">Erlangen</settlement><region type="land" nuts="1">Bavière</region><region type="district" nuts="2">District de Moyenne-Franconie</region></placeName></affiliation></author><author><name sortKey="Goker, Markus" sort="Goker, Markus" uniqKey="Goker M" first="Markus" last="Göker">Markus Göker</name><affiliation wicri:level="1"><nlm:aff id="I1">Leibniz Institute DSMZ-German Collection of Microorganisms and Cell Cultures, Inhoffenstraße 7B, 38124 Braunschweig, Germany</nlm:aff><country xml:lang="fr">Allemagne</country><wicri:regionArea>Leibniz Institute DSMZ-German Collection of Microorganisms and Cell Cultures, Inhoffenstraße 7B, 38124 Braunschweig</wicri:regionArea><wicri:noRegion>38124 Braunschweig</wicri:noRegion><wicri:noRegion>38124 Braunschweig</wicri:noRegion><wicri:noRegion>38124 Braunschweig</wicri:noRegion></affiliation></author><author><name sortKey="Rohde, Manfred" sort="Rohde, Manfred" uniqKey="Rohde M" first="Manfred" last="Rohde">Manfred Rohde</name><affiliation wicri:level="1"><nlm:aff id="I4">Helmholtz Centre for Infection Research (HZI), Inhoffenstraße 7, 38124 Braunschweig, Germany</nlm:aff><country xml:lang="fr">Allemagne</country><wicri:regionArea>Helmholtz Centre for Infection Research (HZI), Inhoffenstraße 7, 38124 Braunschweig</wicri:regionArea><wicri:noRegion>38124 Braunschweig</wicri:noRegion><wicri:noRegion>38124 Braunschweig</wicri:noRegion><wicri:noRegion>38124 Braunschweig</wicri:noRegion></affiliation></author><author><name sortKey="Sproer, Cathrin" sort="Sproer, Cathrin" uniqKey="Sproer C" first="Cathrin" last="Spröer">Cathrin Spröer</name><affiliation wicri:level="1"><nlm:aff id="I1">Leibniz Institute DSMZ-German Collection of Microorganisms and Cell Cultures, Inhoffenstraße 7B, 38124 Braunschweig, Germany</nlm:aff><country xml:lang="fr">Allemagne</country><wicri:regionArea>Leibniz Institute DSMZ-German Collection of Microorganisms and Cell Cultures, Inhoffenstraße 7B, 38124 Braunschweig</wicri:regionArea><wicri:noRegion>38124 Braunschweig</wicri:noRegion><wicri:noRegion>38124 Braunschweig</wicri:noRegion><wicri:noRegion>38124 Braunschweig</wicri:noRegion></affiliation></author><author><name sortKey="Hezbri, Karima" sort="Hezbri, Karima" uniqKey="Hezbri K" first="Karima" last="Hezbri">Karima Hezbri</name><affiliation wicri:level="1"><nlm:aff id="I5">Laboratoire Microorganismes et Biomolécules Actives, Université de Tunis Elmanar (FST) et Université de Carthage (INSAT), 2092 Tunis, Tunisia</nlm:aff><country xml:lang="fr">Tunisie</country><wicri:regionArea>Laboratoire Microorganismes et Biomolécules Actives, Université de Tunis Elmanar (FST) et Université de Carthage (INSAT), 2092 Tunis</wicri:regionArea><placeName><settlement type="city">Tunis</settlement><region nuts="2">Gouvernorat de Tunis</region></placeName></affiliation></author><author><name sortKey="Gtari, Maher" sort="Gtari, Maher" uniqKey="Gtari M" first="Maher" last="Gtari">Maher Gtari</name><affiliation wicri:level="1"><nlm:aff id="I5">Laboratoire Microorganismes et Biomolécules Actives, Université de Tunis Elmanar (FST) et Université de Carthage (INSAT), 2092 Tunis, Tunisia</nlm:aff><country xml:lang="fr">Tunisie</country><wicri:regionArea>Laboratoire Microorganismes et Biomolécules Actives, Université de Tunis Elmanar (FST) et Université de Carthage (INSAT), 2092 Tunis</wicri:regionArea><placeName><settlement type="city">Tunis</settlement><region nuts="2">Gouvernorat de Tunis</region></placeName></affiliation></author><author><name sortKey="Schumann, Peter" sort="Schumann, Peter" uniqKey="Schumann P" first="Peter" last="Schumann">Peter Schumann</name><affiliation wicri:level="1"><nlm:aff id="I1">Leibniz Institute DSMZ-German Collection of Microorganisms and Cell Cultures, Inhoffenstraße 7B, 38124 Braunschweig, Germany</nlm:aff><country xml:lang="fr">Allemagne</country><wicri:regionArea>Leibniz Institute DSMZ-German Collection of Microorganisms and Cell Cultures, Inhoffenstraße 7B, 38124 Braunschweig</wicri:regionArea><wicri:noRegion>38124 Braunschweig</wicri:noRegion><wicri:noRegion>38124 Braunschweig</wicri:noRegion><wicri:noRegion>38124 Braunschweig</wicri:noRegion></affiliation></author><author><name sortKey="Klenk, Hans Peter" sort="Klenk, Hans Peter" uniqKey="Klenk H" first="Hans-Peter" last="Klenk">Hans-Peter Klenk</name><affiliation wicri:level="1"><nlm:aff id="I1">Leibniz Institute DSMZ-German Collection of Microorganisms and Cell Cultures, Inhoffenstraße 7B, 38124 Braunschweig, Germany</nlm:aff><country xml:lang="fr">Allemagne</country><wicri:regionArea>Leibniz Institute DSMZ-German Collection of Microorganisms and Cell Cultures, Inhoffenstraße 7B, 38124 Braunschweig</wicri:regionArea><wicri:noRegion>38124 Braunschweig</wicri:noRegion><wicri:noRegion>38124 Braunschweig</wicri:noRegion><wicri:noRegion>38124 Braunschweig</wicri:noRegion></affiliation></author></analytic><series><title level="j">BioMed Research International</title><idno type="ISSN">2314-6133</idno><idno type="eISSN">2314-6141</idno><imprint><date when="2014">2014</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>A novel Gram-reaction-positive, aerobic actinobacterium, tolerant to mitomycin C, heavy metals, metalloids, hydrogen peroxide, desiccation, and ionizing- and UV-radiation, designated G18<sup>T</sup>, was isolated from dolomitic marble collected from outcrops in Samara (Namibia). The growth range was 15–35°C, at pH 5.5–9.5 and in presence of 1% NaCl, forming greenish-black coloured colonies on GYM <italic>Streptomyces</italic> agar. Chemotaxonomic and molecular characteristics of the isolate matched those described for other representatives of the genus <italic>Geodermatophilus</italic>. The peptidoglycan contained <italic>meso</italic>-diaminopimelic acid as diagnostic diaminoacid. The main phospholipids were phosphatidylethanolamine, phosphatidylcholine, phosphatidylinositol, and small amount of diphosphatidylglycerol. MK-9(H<sub>4</sub>) was the dominant menaquinone and galactose was detected as diagnostic sugar. The major cellular fatty acids were branched-chain saturated acids iso-C<sub>16:0</sub> and iso-C<sub>15:0</sub> and the unsaturated C<sub>17:1</sub><italic>ω</italic>8c and C<sub>16:1</sub><italic>ω</italic>7c. The 16S rRNA gene showed 97.4–99.1% sequence identity with the other representatives of genus<italic> Geodermatophilus</italic>. Based on phenotypic results and 16S rRNA gene sequence analysis, strain G18<sup>T</sup> is proposed to represent a novel species, <italic>Geodermatophilus poikilotrophi</italic>. Type strain is G18<sup>T</sup> (= DSM 44209<sup>T</sup> = CCUG 63018<sup>T</sup>). The INSDC accession number is HF970583. The novel R software package <monospace>lethal</monospace> was used to compute the lethal doses with confidence intervals resulting from tolerance experiments.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Normand, P" uniqKey="Normand P">P Normand</name></author><author><name sortKey="Orso, S" uniqKey="Orso S">S Orso</name></author><author><name sortKey="Cournoyer, B" uniqKey="Cournoyer B">B Cournoyer</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Normand, P" uniqKey="Normand P">P Normand</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Luedemann, Gm" uniqKey="Luedemann G">GM Luedemann</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Skerman, Vbd" uniqKey="Skerman V">VBD Skerman</name></author><author><name sortKey="Mcgowan, V" uniqKey="Mcgowan V">V McGowan</name></author><author><name sortKey="Sneath, Pha" uniqKey="Sneath 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Colwell</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Battista, Jr" uniqKey="Battista J">JR Battista</name></author><author><name sortKey="Earl, Am" uniqKey="Earl A">AM Earl</name></author><author><name sortKey="Park, Mj" uniqKey="Park M">MJ Park</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Shukla, M" uniqKey="Shukla M">M Shukla</name></author><author><name sortKey="Chaturvedi, R" uniqKey="Chaturvedi R">R Chaturvedi</name></author><author><name sortKey="Tamhane, D" uniqKey="Tamhane D">D Tamhane</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Battista, Jr" uniqKey="Battista J">JR Battista</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Stohs, Sj" uniqKey="Stohs S">SJ Stohs</name></author><author><name sortKey="Bagchi, D" uniqKey="Bagchi D">D Bagchi</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Nies, Dh" uniqKey="Nies D">DH Nies</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Fogarty, Rv" uniqKey="Fogarty R">RV Fogarty</name></author><author><name sortKey="Tobin, Jm" uniqKey="Tobin J">JM Tobin</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Spain, Am" uniqKey="Spain A">AM Spain</name></author><author><name sortKey="Peacock, Ad" uniqKey="Peacock A">AD Peacock</name></author><author><name sortKey="Istok, Jd" uniqKey="Istok J">JD Istok</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Poopal, Ac" uniqKey="Poopal A">AC Poopal</name></author><author><name sortKey="Laxman, Rs" uniqKey="Laxman R">RS Laxman</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Rathnayake, Ivn" uniqKey="Rathnayake I">IVN Rathnayake</name></author><author><name sortKey="Megharaj, M" uniqKey="Megharaj M">M Megharaj</name></author><author><name sortKey="Krishnamurti, Gsr" uniqKey="Krishnamurti G">GSR Krishnamurti</name></author><author><name sortKey="Bolan, Ns" uniqKey="Bolan N">NS Bolan</name></author><author><name sortKey="Naidu, R" uniqKey="Naidu R">R Naidu</name></author></analytic></biblStruct></listBibl></div1></back></TEI><affiliations><list><country><li>Allemagne</li><li>Espagne</li><li>Tunisie</li></country><region><li>Bavière</li><li>District de Moyenne-Franconie</li><li>Gouvernorat de Tunis</li></region><settlement><li>Erlangen</li><li>Tunis</li></settlement></list><tree><country name="Allemagne"><noRegion><name sortKey="Montero Calasanz, Maria Del Carmen" sort="Montero Calasanz, Maria Del Carmen" uniqKey="Montero Calasanz M" first="Maria Del Carmen" last="Montero-Calasanz">Maria Del Carmen Montero-Calasanz</name></noRegion><name sortKey="Goker, Markus" sort="Goker, Markus" uniqKey="Goker M" first="Markus" last="Göker">Markus Göker</name><name sortKey="Hofner, Benjamin" sort="Hofner, Benjamin" uniqKey="Hofner B" first="Benjamin" last="Hofner">Benjamin Hofner</name><name sortKey="Klenk, Hans Peter" sort="Klenk, Hans Peter" uniqKey="Klenk H" first="Hans-Peter" last="Klenk">Hans-Peter Klenk</name><name sortKey="Rohde, Manfred" sort="Rohde, Manfred" uniqKey="Rohde M" first="Manfred" last="Rohde">Manfred Rohde</name><name sortKey="Schumann, Peter" sort="Schumann, Peter" uniqKey="Schumann P" first="Peter" last="Schumann">Peter Schumann</name><name sortKey="Sproer, Cathrin" sort="Sproer, Cathrin" uniqKey="Sproer C" first="Cathrin" last="Spröer">Cathrin Spröer</name></country><country name="Espagne"><noRegion><name sortKey="Montero Calasanz, Maria Del Carmen" sort="Montero Calasanz, Maria Del Carmen" uniqKey="Montero Calasanz M" first="Maria Del Carmen" last="Montero-Calasanz">Maria Del Carmen Montero-Calasanz</name></noRegion></country><country name="Tunisie"><region name="Gouvernorat de Tunis"><name sortKey="Hezbri, Karima" sort="Hezbri, Karima" uniqKey="Hezbri K" first="Karima" last="Hezbri">Karima Hezbri</name></region><name sortKey="Gtari, Maher" sort="Gtari, Maher" uniqKey="Gtari M" first="Maher" last="Gtari">Maher Gtari</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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